Wikis that use some CSS rules to set margins to the site layout (for example with this code) will experience a problem : the popups are shifted according to the margin, and then there the popups appears far from the link.
To solve this issue, you need to edit the file extensions/Popups/src/renderer.js
In line 18, add $body = $('body');
In line 490, change to link.offset().left) - ($window.width() - $body.width())/2;
Then you have to build the extension and the following files are changed : extensions/Popups/resources/dist/index.js and index.js.map