When running maintenance/update.php, (after patching a 1.28 to 1.28.1), I get the error "mediawiki/semantic-breadcrumb-links: 1.3.1 installed, ~1.3 required.".
This seem anomalous.
Topic on Extension talk:Semantic Breadcrumb Links/Flow
Hmm, this indeed looks a bit strange. I myself do not run into this problem. However you may try to use the --skip-external-dependencies flag to the "update.php" script and see if this resolves the issue. (per this info)