Extension:Shiny/CentOS 7
For installing the Shiny extension are three or four steps are necessary:
- Install a current R version
- Install the Shiny server
- Install the Shiny extension
- Optionally tweak the Apache configuration
For all steps it is assumed that a LAMP server and MediaWiki is installed and you are logged in as root
.
Additionally steps might be necessary if SELinux is activated, see in /etc/selinux/config
if is set SELINUX=enforcing
. To avoid these steps you could deactivate SELinux by setting SELINUX=disabled
and reboot.
R
editR is not part of the standard repositories in CentOS 7, but part of the Extra Packages for Enterprise Linux (EPEL). How to add the EPEL repository to your CentOS 7 installation, see in the EPEL FAQ: How can I install the packages from the EPEL software repository?. Then run
yum install R
After that R should have been installed.
Shiny server
edit- Install the
shiny
package in R
R -e "install.packages('shiny', repos='https://cran.rstudio.com/')"
- Download the Shiny server (check if the version
1.4.2.786
still is okay)
wget https://download3.rstudio.org/centos5.9/x86_64/shiny-server-1.4.2.786-rh5-x86_64.rpm
- Install the Shiny server to your system
yum install --nogpgcheck shiny-server-1.4.2.786-rh5-x86_64.rpm
- To check if the shiny server works enter in your browser:
http://<my.domain>:3838
- Add a path and permissions to store the shiny apps
cd /srv/shiny-server mkdir mediawiki chown apache:apache mediawiki
MediaWiki
edit- Hint: For the correct installation of the MediaWiki you need to install
php-xml
in CentOS 7 and to restart the Apache web server
yum install php-xml systemctl restart httpd.service
- After the installation of your wiki go to the
extensions
directory
cd <my.wiki>/extensions
- If necessary then install
git
yum install git
- Clone the Shiny extension from
github.com
git clone https://github.com/sigbertklinke/Shiny
- Edit your
<my.wiki>/LocalSettings.php
and add at the end
wfLoadExtension( 'Shiny' );
Apache
editThe Apache webserver listens to port 80 and the Shiny server to port 3838. Usually I modify the Apache configuration file such that any URL with starts with http://<my.domain>/shiny/
is redirected to the Shiny server:
- Go to the Apache configuration directory
cd /etc/httpd/conf.d
- Create a configuration file
reverse-proxy.conf
with
<IfModule mod_proxy.c> ProxyRequests Off <Proxy /shiny/> Require local </Proxy> ProxyPass /shiny/ http://localhost:3838/ ProxyPassReverse /shiny/ http://localhost:3838/ </IfModule>
- If SELinux is active then you need to allow then Apache web server to make outbound connections with
/usr/sbin/setsebool -P httpd_can_network_connect 1
- Restart the apache server
systemctl restart httpd.service
- To check if this works properly enter in your browser:
http://<my.domain>/shiny/
(and when you enterhttp://<my.domain>:3838/
you should see the same page)